I did some quick videos of the display issues I currently have.
First video, showing with Rainmeter
http://youtu.be/HVDMO7p6LyQ
The screen starts on that dark color background, when I click on Rainmeter settings it appears (it gains focus). Then, I go to that screen and click on the desktop, Rainmeter loses focus and the dark background appears again. If I right click on it, nothing happens. After left clicking on it, the windows start menu screen appears.
The second one is the same issues but putting Chrome into focus
http://youtu.be/a5B2roq-iPA
After Chrome is on focus, I can interact with it normally. After it loses focus, the dark color screen appears and it behaves exactly as in the previous video.